[Fachzeitschriftenartikel]
Pastoors, Johannes Tilmann; Deitert, Alexander; Michel, Carina; Günster, Karsten; Finger, Maurice; Hofstede, Jordy; Deischter, Jeff Gaston Jean; Biselli, Andreas; Viell, Jörn; Palkovits, Regina; Jupke, Andreas; Büchs, Jochen
In situ adsorption of itaconic acid from fermentations of Ustilago cynodontis improves bioprocess efficiency
In: Biotechnology for biofuels and bioproducts, 16, 181, 2023
[DOI: 10.1186/s13068-023-02433-w]

[Fachzeitschriftenartikel]
Helm, Tabea; Niehoff, Paul-Joachim; Gätgens, Jochem; Stausberg, Thilo; Pichler, Bernadette; Häßler, Thomas; Wiechert, Wolfgang; Büchs, Jochen; Wierckx, Nick; Noack, Stephan
Introducing molasses as an alternative feedstock into itaconate production using Ustilago sp
In: New biotechnology, 77, 30-39, 2023
[DOI: 10.1016/j.nbt.2023.06.003]

[Fachzeitschriftenartikel]
Forsten, Eva Christine; Finger, Maurice; Scholand, Theresa; Deitert, Alexander; Kauffmann, Kira; Büchs, Jochen
Inoculum cell count influences separation efficiency and variance in Ames plate incorporation and Ames RAMOS test
In: The science of the total environment, 905, 167035, 2023
[DOI: 10.1016/j.scitotenv.2023.167035]

[Fachzeitschriftenartikel]
Niehoff, Paul-Joachim; Müller, Waldemar; Pastoors, Johannes Tilmann; Miebach, Katharina; Ernst, Philipp; Hemmerich, Johannes; Noack, Stephan; Wierckx, Nick; Büchs, Jochen
Development of an itaconic acid production process with Ustilaginaceae on alternative feedstocks
In: BMC biotechnology, 23, 34, 2023
[DOI: 10.1186/s12896-023-00802-9]

[Fachzeitschriftenartikel]
Berg, Christoph; Busch, Selma; Alawiyah, Muthia Dewi; Finger, Maurice; Ihling, Nina; Paquet-Durand, Olivier; Hitzmann, Bernd; Büchs, Jochen
Advancing 2D fluorescence online monitoring in microtiter plates by separating scattered light and fluorescence measurement, using a tunable emission monochromator
In: Biotechnology and Bioengineering, 120 (10), 2925-2939, 2023
[DOI: 10.1002/bit.28474]

[Fachzeitschriftenartikel]
Finger, Maurice; Schröder, Eliot; Berg, Christoph; Dinger, Robert; Büchs, Jochen
Toward standardized solid medium cultivations: Online microbial monitoring based on respiration activity
In: Biotechnology journal, 18 (8), 2200627, 2023
[DOI: 10.1002/biot.202200627]

[Fachzeitschriftenartikel]
Miebach, Katharina; Finger, Maurice; Scherer, Alexandra Maria Katarina; Maaß, Constantin Alexander; Büchs, Jochen
Hydrogen online monitoring based on thermal conductivity for anaerobic microorganisms
In: Biotechnology and Bioengineering, 120 (8), 2199-2213, 2023
[DOI: 10.1002/bit.28502]

[Fachzeitschriftenartikel]
Goldmanns, Jennifer; Röhling, Georg Andreas; Lipa, Marie Kristine; Scholand, Theresa; Deitert, Alexander; May, Tobias; Haas, Evangeline Priya; Boy, Matthias; Herold, Andrea; Büchs, Jochen
Development of a chemically defined medium for Paenibacillus polymyxa by parallel online monitoring of the respiration activity in microtiter plates
In: BMC biotechnology, 23, 25, 2023
[DOI: 10.1186/s12896-023-00793-7]

[Fachzeitschriftenartikel]
Halmschlag, Birthe; Völker, Simon; Hanke, René; Putri, Sastia P.; Fukusaki, Eiichiro; Büchs, Jochen; Blank, Lars M.
Metabolic engineering of B. subtilis 168 for increased precursor supply and poly-γ-glutamic acid production
In: Frontiers in food science and technology, 3, 1111571, 2023
[DOI: 10.3389/frfst.2023.1111571]

[Buchbeitrag, Fachzeitschriftenartikel]
Saur, Katharina; Kiefel, Robert; Niehoff, Paul-Joachim; Hofstede, Jordy; Ernst, Philipp; Brockkötter, Johannes Markus Josef; Gätgens, Jochem; Viell, Jörn; Noack, Stephan; Wierckx, Nick; Büchs, Jochen; Jupke, Andreas
Holistic Approach to Process Design and Scale-Up for Itaconic Acid Production from Crude Substrates
In: Bioengineering : open access journal, 10 (6), 723, 2023
[DOI: 10.3390/bioengineering10060723]

[Fachzeitschriftenartikel]
Sparviero, Sarah; Dicke, Max Daniel; Rosch, Tobias M.; Castillo, Tania; Salgado-Lugo, Holjes; Galindo, Enrique; Peña, Carlos; Büchs, Jochen
Yeast extracts from different manufacturers and supplementation of amino acids and micro elements reveal a remarkable impact on alginate production by A. vinelandii ATCC9046
In: Microbial cell factories, 22, 99, 2023
[DOI: 10.1186/s12934-023-02112-3]

[Fachzeitschriftenartikel]
Steinhoff, Heiko; Finger, Maurice; Osthege, Michael; Golze, Corinna; Schito, Simone; Noack, Stephan; Büchs, Jochen; Grünberger, Alexander
Experimental kS estimation: A comparison of methods for Corynebacterium glutamicum from lab to microfluidic scale
In: Biotechnology & bioengineering, 120 (5), 1288-1302, 2023
[DOI: 10.1002/bit.28345]

[Fachzeitschriftenartikel]
Pastoors, Johannes Tilmann; Baltin, Chris; Bettmer, Jens; Deitert, Alexander; Götzen, Tobias; Michel, Carina; Deischter, Jeff Gaston Jean; Schroll, Isabel; Biselli, Andreas; Palkovits, Regina; Rose, Marcus; Jupke, Andreas; Büchs, Jochen
Respiration-based investigation of adsorbent-bioprocess compatibility
In: Biotechnology for biofuels and bioproducts, 16, 49, 2023
[DOI: 10.1186/s13068-023-02297-0]

[Fachzeitschriftenartikel]
Sparviero, Sarah; Barth, Laura; Keil, Timm; Dinter, Carl; Berg, Christoph; Lattermann, Clemens; Büchs, Jochen
Black glucose-releasing silicon elastomer rings for fed-batch operation allow measurement of the oxygen transfer rate from the top and optical signals from the bottom for each well of a microtiter plate
In: BMC biotechnology, 23, 5, 2023
[DOI: 10.1186/s12896-023-00775-9]

[Buchbeitrag, Fachzeitschriftenartikel]
Al-Mhanna, Najah; Pistorius, Michael; Al Sammarraie, Lanah
Optimization of the Cultivation Conditions of the Green Algae Dunaliella salina by Using Simplex Method
In: Processes, 11 (1), 292, 2023
[DOI: 10.3390/pr11010292]

[Fachzeitschriftenartikel]
Berg, Christoph; Herbst, Laura Marie; Gremm, Lisa; Ihling, Nina; Paquet-Durand, Olivier; Hitzmann, Bernd; Büchs, Jochen
Assessing the capabilities of 2D fluorescence monitoring in microtiter plates with data-driven modeling for secondary substrate limitation experiments of Hansenula polymorpha
In: Journal of biological engineering, 17, 12, 2023
[DOI: 10.1186/s13036-023-00332-0]

[Fachzeitschriftenartikel]
Hoffmann, Kyra; Schilling, Jana Viola; Wandrey, Georg Benjamin; Welters, Tim; Mahr, Stefan; Conrath, Uwe; Büchs, Jochen
Spotting priming-active compounds using parsley cell cultures in microtiter plates
In: BMC plant biology, 23 (1), 72, 2023
[DOI: 10.1186/s12870-023-04043-y]

[Fachzeitschriftenartikel]
Bachmann, Denise; Pal, Upasana; Bockwoldt, Julia A.; Schaffert, Lena; Roentgen, Robin; Büchs, Jochen; Kalinowski, Jörn; Blank, Lars M.; Tiso, Till
C-, N-, S-, and P-Substrate Spectra in and the Impact of Abiotic Factors on Assessing the Biotechnological Potential of Paracoccus pantotrophus
In: Applied Microbiology, 3 (1), 175-198, 2023
[DOI: 10.3390/applmicrobiol3010013]

[Fachzeitschriftenartikel]
Babor, Majharulislam; Paquet-Durand, Olivier; Berg, Christoph; Büchs, Jochen; Hitzmann, Bernd
Online Process State Estimation for Hansenula Polymorpha Cultivation with 2D Fluorescence Spectra-Based Chemometric Model Calibrated from a Theoretical Model in Place of Offline Measurements
In: Fermentation : open access zymology & zymurgy journal, 9 (2), 95, 2023
[DOI: 10.3390/fermentation9020095]

[Fachzeitschriftenartikel]
Hoffmann, Kyra; Halmschlag, Birthe; Briel, Simon; Sieben, Michaela Maria; Putri, Sastia; Fukusaki, Eiichiro; Blank, Lars M.; Büchs, Jochen
Online measurement of the viscosity in shake flasks enables monitoring of γ-PGA production in depolymerase knockout mutants of Bacillus subtilis with the phosphate-starvation inducible promoter Ppst
In: Biotechnology progress, 39 (1), e3293, 2022
[DOI: 10.1002/btpr.3293]

[Buchbeitrag, Fachzeitschriftenartikel]
Finger, Maurice; Sentek, Fabio; Hartmann, Lukas; Palacio-Barrera, Ana M.; Schlembach, Ivan; Rosenbaum, Miriam A.; Büchs, Jochen
Insights into Streptomyces coelicolor A3(2) growth and pigment formation with high-throughput online monitoring
In: Engineering in life sciences, 23 (1), e2100151, 2022
[DOI: 10.1002/elsc.202100151]

[Fachzeitschriftenartikel]
Houfani, Aicha Asma; Anders, Nico; Loogen, Judith; Heyman, Benedikt; Azzouz, Zahra; Bettache, Azzeddine; Büchs, Jochen; Benallaoua, Said
Lignocellulosic biomass degradation enzymes and characterization of cellulase and xylanase from Bosea sp. FBZP-16
In: Biomass Conversion and Biorefinery, 13, 12085-12103, 2021
[DOI: 10.1007/s13399-021-02044-1]

[Fachzeitschriftenartikel]
Schroer, Guido; Toussaint, Valérie; Heyman, Benedikt; Büchs, Jochen; Pöppler, Ann-Christin; Delidovich, Irina
Recovery of biobased 2,3-butanediol from fermentation broths by liquid-phase adsorption onto phenylboronate polymers
In: Current research in green and sustainable chemistry : CRGSC, 5, 100297, 2022
[DOI: 10.1016/j.crgsc.2022.100297]

[Fachzeitschriftenartikel]
Battling, Svenja; Engel, Tobias; Herweg, Elena Ruth; Niehoff, Paul-Joachim; Pesch, Matthias Jan; Scholand, Theresa; Schöpping, Marie; Sonntag, Nina; Büchs, Jochen
Highly efficient fermentation of 5-keto-d-fructose with Gluconobacter oxydans at different scales
In: Microbial cell factories, 21 (1), 255, 2022
[DOI: 10.1186/s12934-022-01980-5]

[Fachzeitschriftenartikel]
Battling, Svenja; Pastoors, Johannes Tilmann; Deitert, Alexander; Götzen, Tobias; Hartmann, Lukas; Schröder, Eliot; Yordanov, Stanislav; Büchs, Jochen
Development of a novel defined minimal medium for Gluconobacter oxydans 621H by systematic investigation of metabolic demands
In: Journal of biological engineering: jbe, 16 (1), 31, 2022
[DOI: 10.1186/s13036-022-00310-y]

[Fachzeitschriftenartikel]
Hertel, Oliver; Neuss, Anne; Busche, Tobias; Brandt, David; Kalinowski, Jörn; Bahnemann, Janina; Noll, Thomas
Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications
In: Frontiers in Bioengineering and Biotechnology, 10, 1010719, 2022
[DOI: 10.3389/fbioe.2022.1010719]

[Fachzeitschriftenartikel]
Palacio-Barrera, Ana M.; Schlembach, Ivan; Finger, Maurice; Büchs, Jochen; Rosenbaum, Miriam A.
Reliable online measurement of population dynamics for filamentous co‐cultures
In: Microbial biotechnology, 15 (11), 2773-2785, 2022
[DOI: 10.1111/1751-7915.14129]

[Fachzeitschriftenartikel]
Finger, Maurice; Palacio-Barrera, Ana M.; Richter, Paul; Schlembach, Ivan; Büchs, Jochen; Agler-Rosenbaum, Miriam
Tunable population dynamics in a synthetic filamentous coculture
In: MicrobiologyOpen, 11 (5), e1324, 2022
[DOI: 10.1002/mbo3.1324]

[Fachzeitschriftenartikel]
Lapierre, Frédéric M.; Bolz, Isabel; Büchs, Jochen; Huber, Robert
Developing a fluorometric urease activity microplate assay suitable for automated microbioreactor experiments
In: Frontiers in Bioengineering and Biotechnology, 936759, 2022
[DOI: 10.3389/fbioe.2022.936759]

[Abstract, Beitrag zu einem Tagungsband, Fachzeitschriftenartikel]
Forsten, Eva Christine; Kauffmann, Kira; Schiwy, A.; Hollert, H.; Büchs, Jochen
P12-48 Streamlining the Ames mutagenicity test by online monitoring of the oxygen transfer rate in 96-well microplate scale
In: Toxicology letters, 368 (Supplement), S193-S193, 2022
[DOI: 10.1016/j.toxlet.2022.07.527]

[Fachzeitschriftenartikel]
Ihling, Nina; Munkler, Lara Pauline; Paul, Richard; Lang, Dietmar; Büchs, Jochen
Introducing oxygen transfer rate measurements as a novel method for time-resolved cytotoxicity assessment in shake flasks
In: Environmental sciences Europe : ESEU, 34 (1), 97, 2022
[DOI: 10.1186/s12302-022-00673-5]

[Abstract, Beitrag zu einem Tagungsband, Fachzeitschriftenartikel]
Miebach, Katharina; Finger, Maurice; Büchs, Jochen
Parallelized Online Measurement of Hydrogen for Time-Efficient Characterization of Microbial Hydrogen Producers
In: Chemie - Ingenieur - Technik : CIT, 94 (9), 1235-1235, 2022
[DOI: 10.1002/cite.202255071]

[Buchbeitrag, Fachzeitschriftenartikel]
Berg, Christoph; Ihling, Nina; Finger, Maurice; Paquet-Durand, Olivier; Hitzmann, Bernd; Büchs, Jochen
Online 2D Fluorescence Monitoring in Microtiter Plates Allows Prediction of Cultivation Parameters and Considerable Reduction in Sampling Efforts for Parallel Cultivations of Hansenula polymorpha
In: Bioengineering : open access journal, 9 (9), 438, 2022
[DOI: 10.3390/bioengineering9090438]

[Fachzeitschriftenartikel]
Wollborn, David; Müller, Rebecca Luise; Munkler, Lara Pauline; Horstmann, Rebekka; Germer, Andrea; Blank, Lars M.; Büchs, Jochen
Auto-induction Screening Protocol for Ranking Clonal Libraries of Pichia pastoris MutS Strains
In: Biotechnology and bioprocess engineering : BBE, 27 (4), 572-585, 2022
[DOI: 10.1007/s12257-022-0006-z]

[Fachzeitschriftenartikel]
Lapierre, Frédéric M.; Schmid, Jakob; Ederer, Benjamin; Ihling, Nina; Büchs, Jochen; Huber, Robert
Publisher Correction: Revealing nutritional requirements of MICP-relevant Sporosarcina pasteurii DSM33 for growth improvement in chemically defined and complex media
In: Scientific reports, 12, 2017, 2022
[DOI: 10.1038/s41598-022-06174-y]

[Fachzeitschriftenartikel]
Wollborn, David; Munkler, Lara Pauline; Horstmann, Rebekka; Germer, Andrea; Blank, Lars M.; Büchs, Jochen
Predicting high recombinant protein producer strains of Pichia pastoris MutS using the oxygen transfer rate as an indicator of metabolic burden
In: Scientific reports, 12 (1), 11225, 2022
[DOI: 10.1038/s41598-022-15086-w]

[Fachzeitschriftenartikel]
Harhues, Tobias; Portheine, Lukas; Plath, Cathleen Anastasia Nadine; Viell, Jörn; Keller, Robert Gregor; Büchs, Jochen; Wessling, Matthias
Direct Electrosynthesis of 2-Butanone from Fermentation Supernatant
In: ACS sustainable chemistry & engineering, 10 (19), 6483-6492, 2022
[DOI: 10.1021/acssuschemeng.2c01971]

[Fachzeitschriftenartikel]
Mann, Marcel; Effert, Darina; Kottenhahn, Patrick; Hüser, Aline; Philipps, Gabriele; Jennewein, Stefan; Büchs, Jochen
Impact of different trace elements on metabolic routes during heterotrophic growth of C. ljungdahlii investigated through online measurement of the carbon dioxide transfer rate
In: Biotechnology progress, 38 (4), e3263, 2022
[DOI: 10.1002/btpr.3263]

[Fachzeitschriftenartikel]
Ihling, Nina; Munkler, Lara Pauline; Paul, Richard; Berg, Christoph; Reichenbächer, Britta; Kadisch, Marvin; Lang, Dietmar; Büchs, Jochen
Non‐invasive and time‐resolved measurement of the respiration activity of Chinese hamster ovary cells enables prediction of key culture parameters in shake flasks
In: Biotechnology journal, 17 (8), 2100677, 2022
[DOI: 10.1002/biot.202100677]

[Fachzeitschriftenartikel]
Brehl, Carl; Brass, Hannah U. C.; Lüchtrath, Clara Agnes; Böckmann, Lukas; Ihling, Nina; Classen, Thomas; Pietruszka, Jörg; Büchs, Jochen
Optimized prodigiosin production with Pseudomonas putida KT2440 using parallelized noninvasive online monitoring
In: Biotechnology progress, 38 (3), e3245, 2022
[DOI: 10.1002/btpr.3245]

[Fachzeitschriftenartikel]
Dinger, Robert; Lattermann, Clemens; Flitsch, David Matthias; Fischer, Jan P.; Kosfeld, Udo; Büchs, Jochen
Device for respiration activity measurement enables the determination of oxygen transfer rates of microbial cultures in shaken 96-deepwell microtiter plates
In: Biotechnology & bioengineering, 119 (3), 881-894, 2022
[DOI: 10.1002/bit.28022]

[Fachzeitschriftenartikel]
Johann, Sarah; Weichert, Fabian G.; Schröer, Lukas; Stratemann, Lucas; Kämpfer, Christoph Leo; Seiler, Thomas-Benjamin; Heger, Sebastian; Töpel, Tobias Alexander; Sassmann, Tim; Pich, Andrij; Jakob, Felix; Schwaneberg, Ulrich; Stoffels, Peter; Philipp, Magnus; Terfrüchte, Marius; Loeschcke, Anita; Schipper, Kerstin; Feldbrügge, Michael; Ihling, Nina; Büchs, Jochen; Bator, Isabel; Tiso, Till; Blank, Lars M.; Roß-Nickoll, Martina; Hollert, Henner
A plea for the integration of Green Toxicology in sustainable bioeconomy strategies - Biosurfactants and microgel-based pesticide release systems as examples
In: Journal of hazardous materials, 426, 127800, 2021
[DOI: 10.1016/j.jhazmat.2021.127800]

[Abstract, Fachzeitschriftenartikel]
Forsten, Eva Christine; Kauffmann, Kira; Schiwy, A.; Hollert, H.; Büchs, Jochen
Batch-to-batch variation of Ames test results for S. typhimurium TA 98 and TA 100 correlates with growth kinetics
In: Toxicology letters, 350 (Supplement), S97-S97, 2021
[DOI: 10.1016/S0378-4274(21)00474-4]

[Buchbeitrag, Fachzeitschriftenartikel]
Hoffmann, Maximilian; Priesmann, Jan; Nolting, Lars; Praktiknjo, Aaron Jonathan; Kotzur, Leander; Stolten, Detlef
Typical periods or typical time steps? A multi-model analysis to determine the optimal temporal aggregation for energy system models
In: Applied energy, 304, 117825, 2021
[DOI: 10.1016/j.apenergy.2021.117825]

[Fachzeitschriftenartikel]
Jadebeck, Johann F.; Theorell, Axel; Leweke, Samuel; Nöh, Katharina
HOPS: high-performance library for (non-)uniform sampling of convex-constrained models
In: Bioinformatics, 37 (12), 1776-1777, 2020
[DOI: 10.1093/bioinformatics/btaa872]

[Fachzeitschriftenartikel]
Ihling, Nina; Munkler, Lara Pauline; Berg, Christoph; Reichenbächer, Britta; Wirth, Johannes; Lang, Dietmar; Wagner, Roland; Büchs, Jochen
Time-Resolved Monitoring of the Oxygen Transfer Rate of Chinese Hamster Ovary Cells Provides Insights Into Culture Behavior in Shake Flasks
In: Frontiers in Bioengineering and Biotechnology, 9, 725498, 2021
[DOI: 10.3389/fbioe.2021.725498]

[Fachzeitschriftenartikel]
Lüken, Arne Can; Bruckhaus, Maike; Kosfeld, Udo; Emondts, Meike; Wessling, Matthias
Automated tangential-flow diafiltration device
In: HardwareX, 10, e00200, 2021
[DOI: 10.1016/j.ohx.2021.e00200]

[Fachzeitschriftenartikel]
Wierckx, Nick; Miebach, Katharina; Ihling, Nina; Hussnaetter, Kai P.; Büchs, Jochen; Schipper, Kerstin
Perspectives for the application of Ustilaginaceae as biotech cell factories
In: Essays in biochemistry, 65 (2), 365-379, 2021
[DOI: 10.1042/EBC20200141]

[Fachzeitschriftenartikel]
Gausmann, Marcel; Kocks, Christian Uwe; Pastoors, Johannes Tilmann; Büchs, Jochen; Wierckx, Nick; Jupke, Andreas
Electrochemical pH-T-Swing Separation of Itaconic Acid for Zero Salt Waste Downstream Processing
In: ACS sustainable chemistry & engineering, 9 (28), 9336-9347, 2021
[DOI: 10.1021/acssuschemeng.1c02194]

[Fachzeitschriftenartikel]
Loogen, Judith; Müller, André; Balzer, Arne; Weber, Sophie; Schmitz, Kathrin; Krug, Roxanne; Schaffrath, Ulrich; Pietruszk, Jörg; Conrath, Uwe; Büchs, Jochen
An illuminated respiratory activity monitoring system identifies priming-active compounds in plant seedlings
In: BMC plant biology, 21, 324, 2021
[DOI: 10.1186/s12870-021-03100-8]